Nier: Automata

Resistance Camp

After The Machine Surge

After Machine Recon

After Assault

After The Forest Kingdom

After Missile Supply Mission

There is now a shop selling unique chips, including Auto-collect Items.

After Resupply

Once you talk to Anemone, you are at the last point in the playthrough where you have access to the open world, quests, items, etc. Anything optional you still want to do on this playthrough, do it before heading to Abandoned Factory.

During Weird Machines

Route C