xYou must have talked to him at the entrance to the desert at least once for his routes to vary. When stopped in front of Resistance Camp, Emil sells either +6 chips or weapons, semi-rare materials and a Dress Module. Keep reloading the area if he doesn't show up or if he's not selling what you're looking for.
route-aroute-bwOnce you talk to Anemone, you are at the last point in the playthrough where you have access to the open world, quests, items, etc. Anything optional you still want to do on this playthrough, do it before heading to Abandoned Factory.